An integral part of precision medicine involves the pairing of a drug with diagnostic tests (companion diagnostics) that have the potential to assess a person’s specific genetic make-up, thereby predicting drug efficacy, drug resistance and therapeutic response.

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Systems Biology has emerged as an effective approach to studying complex interactions within biological systems. By studying entire networks or pathways, we can better understand the underlying structure of cell signaling networks and how changes in these networks may affect the flow of biological information. Comprehensive maps of protein networks…

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Identifying Therapeutic Targets Through Profiling of Cancer Signaling Pathways

The signaling pathways controlling cell growth and differentiation are almost invariably altered in cancer and the metastatic spread of primary tumours to other organs is facilitated by many signaling pathways. Comprehensive maps of protein networks will lead to identification of nodal signaling protein motifs and open up avenues for better therapeutic intervention strategies. Immune-mediated tumour cell killing can be carried out by an antibody binding to a cell surface receptor and blocking dimerization, kinase activation and downstream signaling, leading to reduced proliferation and apoptosis or an antibody binding to an enzyme leading to neutralization, signaling abrogation and cell death1.

Deciphering these interconnected signaling pathways is leading to the development of monoclonal antibody cancer drugs. For example, the observation that the epidermal growth factor receptor-2 (ERBB2) gene is amplified, and that its encoded receptor protein is aberrantly expressed in some breast cancers triggered the development of trastuzumab (Herceptin), which is an effective antibody therapy. Bevacizumab (Avastin), which is a monoclonal antibody that inhibits vascular endothelial growth factor (VEGF) receptor, is an example of an angiogenesis signaling pathway-targeted therapy that has shown some efficacy in the treatment of colorectal cancers. The dependence of many prostate tumour cells on androgen receptor (AR) signalling, which is required for the survival of normal prostate secretory epithelial cells, and the therapeutic efficacy of AR antagonists are further examples of the validity of these concepts2.

Application Example

Identification of Key Phosphoproteins that Mediate Endogenous
GRB2 Protein Network in Breast Cancer Cells

After demonstrating the ability to identify SH2 domain-phosphoprotein interactions using recombinant proteins, a team led by researchers at the University of Houston set out to examine the feasibility of detecting in vivo protein-phosphoprotein interactions. The researchers developed a cell based total protein assay to detect endogenous phosphoprotein-protein interactions mediated by tyrosine phosphorylation events in cancer cells.

They hypothesized that the concentration of tyrosine phosphopeptides on the PepArray is much higher…

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  • References

  1. Scott AM, Wolchok JD, Old LJ. (2012) Antibody therapy of cancerNature Reviews Cancer 12(4): 278-287. [article]
  2. Benson JD, Chen YP, Cornell-Kennon SA, Dorsch M, Kim S, Leszczyniecka M, Sellers WR and Christoph Lengauer C. (2006) Validating cancer drug targetsNature 441 (7092): 451-456. [article]
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