Sigma factors are necessary for the initiation of transcription by RNA polymerase in bacteria and plastids of plants. In plants, a small family of nuclear genes is responsible for encoding the sigma factor proteins.
In a recent study, researchers performed a genome-wide identification and expression analysis of leaf gradient in millet (Setaria italica) to characterize sigma factor genes and their proteins. By applying several bioinformatics tools, they identified chromosome locations of seven sigma factor genes in millet and their protein 3D structures. All these proteins contained three conserved domains of σ-70 family. These Sigma factor genes have a closer phylogenetic relationship with their orthologs in maize than that in rice. RNA-Sequencing along the millet leaf developmental gradient indicated that Sisig1, Sisig5, Sisig6 showed extremely high expression levels in leaf middle and tip regions. Combining the conservation analysis of residues of each sigma factor protein with the DGE profiles of these proteins, it revealed that Sisig5 plays the housekeeping role compared with other Sisig proteins.
This study will facilitate the future research on crop evolution and the functional studies of sigma factor genes in millet.
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References
Liu H, Cheng J, Cheng S, Fan H, Wen B, Liu Z. (2016) Genome-wide Identification and Expression Analysis along the Leaf developmental Gradient of the Sigma Factor Gene Family in Foxtail Millet (Setaria italica) J App Biol Biotech. 4(4): 011-030. doi:10.7324/JABB.2016.40402 [abstract]